PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G078300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 231aa    MW: 26700.3 Da    PI: 9.7308
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G078300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.92.4e-15132222199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k +t+s+v+   +l lp +f +++  +k ++  ++l de+  + e  +   k++    l++GW++F+ +++L +gD +vF+l++r++f 
  Brast07G078300.1.p 132 FVKPMTQSHVTGGFWLGLPTQFSRKYL-PK-RDERIILVDEEDDESETLYLALKRG----LSAGWRGFAIDHKLVDGDCLVFQLIERTKF- 215
                         89************************4.32.4457999998888888888555555....9************************98888. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +v ++r+
  Brast07G078300.1.p 216 -KVYIIRE 222
                         .8988886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-23126223IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-19127223IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-25130221No hitNo description
PROSITE profilePS5086311.787132223IPR003340B3 DNA binding domain
SMARTSM010197.8E-19132223IPR003340B3 DNA binding domain
PfamPF023623.0E-13132222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAGAIPYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAAK PSPAKSLKRK SRVQGEAGQD  60
VPLRRSGRVA SLPEQPKYRY EDSLVFEKKP RRTYSTRKDL TNRVYATDEA RDYTITKAEE  120
LQDKLGSGYP IFVKPMTQSH VTGGFWLGLP TQFSRKYLPK RDERIILVDE EDDESETLYL  180
ALKRGLSAGW RGFAIDHKLV DGDCLVFQLI ERTKFKVYII RESSYYENDN *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743465e-44AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227844.11e-163PREDICTED: B3 domain-containing protein Os06g0194400-like
RefseqXP_010227845.11e-163PREDICTED: B3 domain-containing protein Os06g0194400-like
SwissprotQ69V361e-123Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLI1GZP01e-163I1GZP0_BRADI; Uncharacterized protein
STRINGBRADI1G45517.11e-163(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-56B3 family protein